PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009794806.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 170aa    MW: 18885.2 Da    PI: 8.4109
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009794806.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.28.8e-3954111259
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 
                     ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GGalrnvPvG+grrk k
  XP_009794806.1  54 PDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKAK 111
                     7899****************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2953111IPR003851Zinc finger, Dof-type
PfamPF027014.4E-3256111IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.25858112IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106096IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010214Biological Processseed coat development
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MAQVQESRIS QGIKLFGATI QVQAKQAAKG LDHHQQPNKV DHDHDIDEDQ EKKPDKIIPC  60
PRCKSMETKF CYFNNYNVNQ PRHFCKGCQR YWTAGGALRN VPVGAGRRKA KPPCGGSDGD  120
MAAGLSDGCF FDVTNHGNIH QLDFDGVVAE EWHLFPAAKR RRSTSGSQSC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00166DAPTransfer from AT1G29160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153883e-94AC215388.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0122E16, complete sequence.
GenBankHG9755143e-94HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794806.11e-127PREDICTED: dof zinc finger protein DOF1.5-like
RefseqXP_016492835.11e-127PREDICTED: dof zinc finger protein DOF1.5-like
SwissprotP683501e-51DOF15_ARATH; Dof zinc finger protein DOF1.5
TrEMBLM1DDW08e-85M1DDW0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000874582e-84(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72402232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29160.18e-53Dof family protein